Commit Graph

813 Commits

Author SHA1 Message Date
Matej Ferencevic
3cd89e1fe4 Remove internal mgp.py file from Python traceback
Reviewers: llugovic

Reviewed By: llugovic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2740
2020-03-31 15:49:06 +02:00
Matej Ferencevic
90c83de7c2 Fix Python memory leaks when exceptions are thrown
Summary:
The Python `ExceptionInfo` data has the potential to extend lifetime of Python
objects that were on the Python frame while the execution was thrown. This
lifetime extension is very dangerous when executing Python procedures because
we use a custom internal memory allocator that is destroyed immediately when
the procedure is done with its execution.

This diff only keeps the formatted Python traceback (as a string) to avoid any
lifetime extension for the Python objects so that the memory allocator can
safely be destroyed after the procedure has finished its execution.

Reviewers: llugovic

Reviewed By: llugovic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2739
2020-03-31 14:24:05 +02:00
Matej Ferencevic
7cd96dc2f5 Fix Python objects init
Summary:
`PyObject_Init` shouldn't be used in conjunction with `PyObject_New`.

The official Python documentation doesn't say this explicitly and many examples
on the web suggest that they must be used together. When they are used together
everything works when Memgraph is built against the release Python binary, but
doesn't work when built against the debug Python binary.

An implicit example that `PyObject_Init` shouldn't be used with `PyObject_New`
can be found in the Python source, in the file `Include/objimpl.h`:
```
   This example code implements an object constructor with a custom
   allocator, where PyObject_New is inlined, and shows the important
   distinction between two steps (at least):
       1) the actual allocation of the object storage;
       2) the initialization of the Python specific fields
      in this storage with PyObject_{Init, InitVar}.

   PyObject *
   YourObject_New(...)
   {
       PyObject *op;

       op = (PyObject *) Your_Allocator(_PyObject_SIZE(YourTypeStruct));
       if (op == NULL)
       return PyErr_NoMemory();

       PyObject_Init(op, &YourTypeStruct);

       op->ob_field = value;
       ...
       return op;
   }

   Note that in C++, the use of the new operator usually implies that
   the 1st step is performed automatically for you, so in a C++ class
   constructor you would start directly with PyObject_Init/InitVar
```
It explains that `PyObject_New` is actually equal to `malloc` +
`PyObject_Init`.

Reviewers: llugovic

Reviewed By: llugovic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2737
2020-03-30 12:40:42 +02:00
Matej Ferencevic
41551bcd36 Fix Python struct formatting
Reviewers: llugovic

Reviewed By: llugovic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2738
2020-03-28 20:13:02 +01:00
Teon Banek
b7738c64b3 Make py::Object conversion to PyObject * explicit
Summary:
This fixes an issue in Py(Vertex|Edge)GetProperty and prevents any
further issues of that type at the cost of additional typing effort.

Reviewers: ipaljak, llugovic

Reviewed By: ipaljak, llugovic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2735
2020-03-24 12:23:13 +01:00
Matej Ferencevic
a8b81fdcde Unify C/Python query module logging
Summary:
Make logging for operations with C/Python query modules (loading, closing,
reloading) consistent.

Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2734
2020-03-20 16:02:29 +01:00
Teon Banek
2b8f068ca9 Correctly delimit arguments when printing signature
Reviewers: mferencevic, ipaljak, llugovic

Reviewed By: mferencevic, ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2732
2020-03-19 14:19:53 +01:00
Teon Banek
d4c2798551 Save and restore the exception in WithMgpModule
Reviewers: mferencevic, ipaljak, llugovic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2731
2020-03-19 14:19:50 +01:00
Ivan Paljak
44917fdfa6 Use storage::EdgeAccessor::Gid() as __hash__ for mgp.Edge
Reviewers: teon.banek, mferencevic

Reviewed By: teon.banek, mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2729
2020-03-18 15:13:13 +01:00
Teon Banek
ba55372610 Fix memory leak in GetVertexById
Reviewers: mferencevic, ipaljak, llugovic

Reviewed By: ipaljak, llugovic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2727
2020-03-18 10:32:19 +01:00
Teon Banek
008efaf243 Implement pretty printing CallProcedure operator
Reviewers: mferencevic, llugovic, ipaljak

Reviewed By: mferencevic, llugovic, ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2726
2020-03-18 10:32:16 +01:00
Matej Ferencevic
5632852890 Reduce number of errors in production log
Summary:
Currently, when starting Memgraph with the production package (DEB/RPM),
Memgraph always outputs an error for not being able to replace an existing
query module (`example.so` with `example.c`). This diff introduces a precheck
so that the error message is correct - so that Memgraph doesn't try to replace
an `.so` file with a `.c` file before verifying that the `.c` file is a valid
query module (which it obviously isn't). Also, I have moved the source of the
example into a subdirectory so that it isn't even considered while loading
modules.

Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2724
2020-03-17 13:34:11 +01:00
Teon Banek
d63eb191f9 Fix a planning issue when CALL preceded filtering
Reviewers: mferencevic, ipaljak, llugovic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2722
2020-03-16 15:06:39 +01:00
Lovro Lugovic
dd5d29fa1d Implement conversion of mgp_vertex to/from mgp.Vertex
Summary:
- Fix AssertPickleAndCopyAreNotSupported
- Test Vertex and Edge conversions

Reviewers: teon.banek, ipaljak

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2717
2020-03-11 16:13:24 +01:00
Ivan Paljak
181f937c15 Add Python class for mgp_properties_iterator
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2712
2020-03-10 14:34:32 +01:00
Teon Banek
c4a1a6c0b4 Extract py::AppendToSysPath function
Reviewers: mferencevic, ipaljak, llugovic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2714
2020-03-10 11:06:21 +01:00
Teon Banek
fbdcad1106 Implement calling Python procedures
Summary:
You should now be able to invoke query procedures written in Python. To
test the example you can run memgraph with PYTHONPATH set to `include`.
For example, assuming you are in the root of the repo, run this command.

    PYTHONPATH=$PWD/include ./build/memgraph --query-modules-directory=./query_modules/

Alternatively, you can set a symlink inside the ./query_modules to point
to `include/mgp.py`, so there's no need to set PYTHONPATH. For example,
assuming you are in the root of the repo, run the following.

    cd ./query_modules
    ln -s ../include/mgp.py
    cd ..
    ./build/memgraph --query-modules-directory=./query_modules/

Depends on D207

Reviewers: mferencevic, ipaljak, dsantl

Reviewed By: ipaljak

Subscribers: buda, tlastre, pullbot

Differential Revision: https://phabricator.memgraph.io/D2708
2020-03-06 16:25:51 +01:00
Teon Banek
1d30a2e5cb Convert mgp_value to 'mgp' Python types, not '_mgp' ones
Summary:
When invoking a Python registered procedures we want to convert
`mgp_value` types to user facing 'mgp' types.

Depends on D2706

Reviewers: mferencevic, ipaljak

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2707
2020-03-06 11:23:08 +01:00
Teon Banek
31a4c55e76 Add HasAttr, GetAttr, and SetAttr to py::Object
Reviewers: ipaljak

Reviewed By: ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2706
2020-03-06 11:22:39 +01:00
Teon Banek
456267249e Convert mgp_list to PyTuple instead of PyList
Summary: It's much safer to give users immutable types.

Reviewers: ipaljak

Reviewed By: ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2705
2020-03-06 11:22:18 +01:00
Teon Banek
6e9404c89a Correctly implement mgp_value move constructor
Reviewers: mferencevic, ipaljak

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2704
2020-03-05 10:00:52 +01:00
Teon Banek
74d9dd0b0a Implement mgp.Path
Reviewers: ipaljak, mferencevic

Reviewed By: ipaljak, mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2700
2020-03-04 12:51:06 +01:00
Ivan Paljak
ec0caad44c Fix memory leaks in Py*Iter* methods
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2699
2020-03-02 14:40:59 +01:00
Tonko Sabolcec
14c4c6d060 Update query dump with unique constraints
Summary:
Now that unique constraint feature is added to Memgraph database,
we should update `DUMP DATABASE` with list of existing unique constraints.

Reviewers: mferencevic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2698
2020-03-02 13:50:35 +01:00
Teon Banek
b922ca75d0 Add mgp_path_equal to C API
Reviewers: ipaljak, mferencevic

Reviewed By: ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2697
2020-03-02 13:19:22 +01:00
Teon Banek
f5a94d6e29 Make MakePy<name> less error prone
Reviewers: ipaljak

Reviewed By: ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2696
2020-03-02 13:19:19 +01:00
Tonko Sabolcec
eed83a210e Implement unique constraint functionality in query module
Reviewers: mferencevic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2681
2020-03-02 13:00:04 +01:00
Teon Banek
64da28ca83 Fix some memory leaks in PyObjectToMgpValue
Reviewers: ipaljak

Reviewed By: ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2695
2020-02-28 10:57:39 +01:00
Teon Banek
4049b9d10a Add mgp_path_copy to C API
Reviewers: ipaljak

Reviewed By: ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2694
2020-02-28 10:57:36 +01:00
Ivan Paljak
bb4e747fd3 Finalize PyEdgeFromVertex and PyEdgeToVertex implementations
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2693
2020-02-28 09:36:47 +01:00
Ivan Paljak
b6b6403b06 Implement PyEdgesIterator and integrate with PyVertex
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2692
2020-02-27 15:57:02 +01:00
Teon Banek
ad892f2db3 Support typing annotations in Python Query Modules
Reviewers: mferencevic, ipaljak, tlastre

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2689
2020-02-27 13:18:57 +01:00
Ivan Paljak
32e56684db Add Python class for mgp_vertex
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2688
2020-02-26 14:01:43 +01:00
Matej Ferencevic
bfbace8168 Remove old HA implementation
Reviewers: teon.banek, ipaljak

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2686
2020-02-25 17:19:35 +01:00
Matej Ferencevic
2562070b06 Use std::string_view in storage NameTo... functions
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2683
2020-02-25 12:15:31 +01:00
Teon Banek
e7f363ecbe Add Python class for mgp_edge
Reviewers: teon.banek, ipaljak, mferencevic

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2679
2020-02-25 10:26:08 +01:00
Teon Banek
34db077cbd Register Python procedures
Summary:
With this diff you should now be able to register `example.py` and read
procedures found there. The procedures will be listed through `CALL
mg.procedures() YIELD *` query, but invoking them will raise
`NotYetImplemented`.

If you wish to test this, you will need to run the Memgraph executable
with PYTHONPATH set to the `include` directory where `mgp.py` is found.
Additionally, you need to pass `--query-modules-directory` flag to
Memgraph, such that it points to where it will find the `example.py`.

For example, when running from the root directory of Memgraph repo, the
shell invocation below should do the trick (assuming `./build/memgraph`
is where is the executable). Make sure that `./query_modules/` does not
have `example.so` built, as that may interfere with loading
`example.py`.

    PYTHONPATH=$PWD/include ./build/memgraph --query-modules-directory=./query_modules/

Reviewers: mferencevic, ipaljak, llugovic

Reviewed By: mferencevic, ipaljak, llugovic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2678
2020-02-19 14:35:22 +01:00
Matej Ferencevic
47ce444c02 Fix auth Cypher visitor
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2675
2020-02-17 17:41:08 +01:00
Matej Ferencevic
e8903ef477 Expose auth user/role name regex
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2673
2020-02-17 17:40:53 +01:00
Lovro Lugovic
5953f07be3 Add conversion of py::Object to mgp_value
Reviewers: teon.banek, ipaljak, mferencevic

Reviewed By: teon.banek, ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2667
2020-02-14 16:08:20 +01:00
Teon Banek
ad740e4ae2 Add _mgp.Graph and _mgp.VerticesIterator to embedded Python
Reviewers: llugovic, ipaljak, mferencevic

Reviewed By: ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2669
2020-02-14 10:00:55 +01:00
Tonko Sabolcec
95c9755e13 Support property set for unique constraints
Summary:
Before this change, unique constraints supported only pairs of label
and a single property. With this change, unique constraints can be
created for label and set of properties.
Better tests for unique constraints in general are also included in
this diff.

Reviewers: mferencevic, teon.banek

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2653
2020-02-13 12:41:35 +01:00
Teon Banek
0a7de969f3 Add converting mgp_value to py::Object
Reviewers: mferencevic, ipaljak, llugovic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2665
2020-02-12 09:30:14 +01:00
Ivan Paljak
2aa960403a Refactor query module to support differently loaded modules
Summary:
`query::procedure::Module` is now an interface class through which
users interact with loaded modules. At the moment, the interface is implemented
by three concrete classes: `query::procedure::BuiltinModule`,
`query::procedure::SharedLibraryModule` and `query::procedure::PythonModule`.

Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2664
2020-02-11 16:56:26 +01:00
Tonko Sabolcec
e2e7823ec4 Add basic support for unique constraints in storage
Summary:
This diff contains a basic implementation of unique constraints consistent with
the MVCC storage.
Stale records in the unique constraints are collected by the garbage collector.
Tests for checking correctness of unique constraints and violations are included.
Note: currently we only support a pair of label and a single property. Support for
multiple properties will be added later.

Reviewers: mferencevic, teon.banek

Reviewed By: mferencevic, teon.banek

Subscribers: buda, ipaljak, pullbot

Differential Revision: https://phabricator.memgraph.io/D2608
2020-02-10 12:45:28 +01:00
Teon Banek
ab53cbb0c3 Embed Python and import modules into global interpreter
Summary:
This only imports the `.py` files into the global interpreter. These
modules are not exposed to query execution. A later diff will add that
support.

Reviewers: mferencevic, ipaljak

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2660
2020-02-10 11:06:08 +01:00
Matej Ferencevic
a3229881bf Move Antlr generation to query
Summary:
The antlr openCypher parser generation is moved to query. Also, header files
have been added to the list of generated files so that if any header file is
deleted CMake will know that it has to regenerate it.

Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2652
2020-01-31 16:14:05 +01:00
Matej Ferencevic
015573b5af Clean-up utils/hashing
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2645
2020-01-28 10:40:43 +01:00
Matej Ferencevic
0683ed4134 Remove MG_SINGLE_NODE_V2 define
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2637
2020-01-23 17:24:33 +01:00
Matej Ferencevic
6d10d90d98 Remove unused utils
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D2636
2020-01-23 17:22:51 +01:00