Commit Graph

179 Commits

Author SHA1 Message Date
Marin Tomic
28ba872668 Implement single node two-sided BFS
Reviewers: mculinovic, teon.banek, ipaljak, buda, msantl

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1567
2018-08-29 12:56:39 +02:00
Marko Culinovic
dab95af366 Extract stats to static lib
Reviewers: teon.banek, mferencevic

Reviewed By: teon.banek, mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1546
2018-08-23 10:33:50 +02:00
Matej Ferencevic
805b86f5e0 Fix memory warning errors
Reviewers: buda

Reviewed By: buda

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1543
2018-08-17 16:29:46 +02:00
Matej Ferencevic
ce306a4c21 Implement Kafka Python transform
Summary:
The Kafka Python transform functionality uses a Python script to transform
incoming Kafka data into queries and parameters that are executed against the
database. When starting the Python transform script it is started in a
sandboxed environment so that it can't do harm to the host system or the
database.

Reviewers: msantl, teon.banek

Reviewed By: msantl

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1509
2018-08-06 13:53:26 +02:00
Teon Banek
f7f7ccde60 Remove boost from the codebase
Summary:
Since we switched to Cap'n Proto serialization there's no need for
keeping boost around anymore.

Reviewers: mtomic, mferencevic, buda

Reviewed By: mtomic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1515
2018-07-30 15:34:12 +02:00
Teon Banek
9f460914ed Separate distributed implementation of GraphDbAccessor
Summary:
GraphDbAccessor is now constructed only through GraphDb. This allows the
concrete GraphDb to instantiate a concrete GraphDbAccessor. This allows
us to use virtual calls, so that the implementation may be kept
separate. The major downside of doing things this way is heap allocation
of GraphDbAccessor. In case it turns out to be a real performance
issues, another solution with pointer to static implementation may be
used.

InsertVertexIntoRemote is now a non-member function, which reduces
coupling. It made no sense for it to be member function because it used
only the public parts of GraphDbAccessor.

Reviewers: msantl, mtomic, mferencevic

Reviewed By: msantl

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1504
2018-07-26 09:16:39 +02:00
Dominik Gleich
0681040395 Durability distributed wal
Summary:
Recover only snapshot

Return recovery info on worker recovery

Update tests

Start wal recovery

Single node wal split

Keep track of wal possible to recover

Fix comment

Wal tx intersection

Merge branch 'master' into sync_wal_tx

Reviewers: buda, ipaljak, dgleich, vkasljevic, teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1489
2018-07-24 08:55:13 +02:00
Marin Tomic
4a3808b982 Remove keyword lowercasing from stripper
Summary: This is a simple thing that enables us to use keywords as symbolic names. A bad thing is that planning will be done for queries which differ only in keyword case (e.g. "MATCH (x) RETURN x" and "match (x) return x"), but that should not be a significant performance impact as queries are done programmaticaly when high throughput is expected and we don't expect letter case change in that case.

Reviewers: buda, mferencevic, teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1496
2018-07-19 17:08:45 +02:00
Marko Budiselic
888c6a4bca Add support for the id function
Reviewers: dgleich, teon.banek, mferencevic

Reviewed By: mferencevic

Subscribers: dgleich, mferencevic, teon.banek, pullbot

Differential Revision: https://phabricator.memgraph.io/D1462
2018-07-04 22:14:13 +02:00
Marin Tomic
18d8129b99 Implement string functions
Summary:
Added missing string functions.
I also cleaned up error messages a bit in effort to make them uniform.

Reviewers: teon.banek, buda

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1458
2018-07-02 10:39:11 +02:00
Matej Ferencevic
44821a918c Initial implementation of telemetry
Summary:
Add telemetry to main memgraph binary

Add resource usage collector

Add telemetry flag

Change telemetry collector logic

Fix utils compilation

Add timestamp

Add first version of interactive test

Started working on test runner

Implement all tests

Flake8 on runner.py

Integrate test with Apollo

Add TODO

Reviewers: buda, teon.banek

Reviewed By: buda, teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1419
2018-06-20 14:49:07 +02:00
Marin Tomic
b9be394cb2 Add parsing and planning of basic user management queries
Reviewers: teon.banek, mferencevic

Reviewed By: teon.banek, mferencevic

Subscribers: pullbot, buda

Differential Revision: https://phabricator.memgraph.io/D1398
2018-06-14 16:51:22 +02:00
Teon Banek
e0474a8e92 Replace boost with capnp in RPC
Summary:
Converts the RPC stack to use Cap'n Proto for serialization instead of
boost. There are still some traces of boost in other places in the code,
but most of it is removed. A future diff should cleanup boost for good.

The RPC API is now changed to be more flexible with regards to how
serialize data. This makes the simplest cases a bit more verbose, but
allows complex serialization code to be correctly written instead of
relying on hacks. (For reference, look for the old serialization of
`PullRpc` which had a nasty pointer hacks to inject accessors in
`TypedValue`.)

Since RPC messages were uselessly modeled via inheritance of Message
base class, that class is now removed. Furthermore, that approach
doesn't really work with Cap'n Proto. Instead, each message type is
required to have some type information. This can be automated, so
`define-rpc` has been added to LCP, which hopefully simplifies defining
new RPC request and response messages.

Specify Cap'n Proto schema ID in cmake

This preserves Cap'n Proto generated typeIds across multiple generations
of capnp schemas through LCP. It is imperative that typeId stays the
same to ensure that different compilations of Memgraph may communicate
via RPC in a distributed cluster.

Use CLOS for meta information on C++ types in LCP

Since some structure slots and functions have started to repeat
themselves, it makes sense to model C++ meta information via Common Lisp
Object System.

Depends on D1391

Reviewers: buda, dgleich, mferencevic, mtomic, mculinovic, msantl

Reviewed By: msantl

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1407
2018-06-04 10:45:12 +02:00
Teon Banek
e56ed0acce Add generating Capnp schema in LCP
Summary:
Add additional structs and functions for handling C++ meta information.
Add capnp-file and capnp-id arguments to lcp:process-file.
Generate cpp along with hpp and capnp in lcp.
Wrap LogicalOperator base class in lcp:define-class.
Modify logical operators for capnp serialization.
Add query/common.capnp.

Reviewers: mculinovic, buda, mtomic, msantl, ipaljak, dgleich, mferencevic

Reviewed By: msantl

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1391
2018-05-30 16:14:54 +02:00
Teon Banek
c7b6cae526 Extract io/network into mg-io library
Reviewers: buda, dgleich, mferencevic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1411
2018-05-30 14:58:41 +02:00
Teon Banek
ce29517998 Extract utils into mg-utils static library and explicitly list tests
Summary:
Utils source files are now moved to a standalone mg-utils library.

Unit and manual tests are no longer collected using glob recursion in
cmake, but are explicitly listed. This allows us to set only required
dependencies of those tests.

Both of these changes should improve compilation and link times, as well
as lower the disk usage.

Additional improvement would be to cleanup utils header files to be
split in .hpp and .cpp as well as merging threading into utils. Other
potential library extractions that shouldn't be difficult are:

  * data_structures
  * io/network
  * communication

Reviewers: buda, mferencevic, dgleich, ipaljak, mculinovic, mtomic, msantl

Reviewed By: buda

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1408
2018-05-30 09:41:56 +02:00
Marin Tomic
91e38f6413 Distributed BFS
Summary: depends on D1387

Reviewers: msantl, teon.banek, buda

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1341
2018-05-15 17:38:51 +02:00
Marko Culinovic
49d69560e6 Serialize cpp types with capnp
Summary: Serialize shared_ptr, unique_ptr, optional and vector.

Reviewers: teon.banek, msantl

Reviewed By: teon.banek

Subscribers: buda, pullbot

Differential Revision: https://phabricator.memgraph.io/D1364
2018-05-04 15:02:38 +02:00
Marko Culinovic
8795501890 Serialize ast using capnproto
Reviewers: teon.banek, florijan, msantl

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1306
2018-05-03 14:12:38 +02:00
Marko Budiselic
7d94878860 Add rocksdb as a lib + initial implementation of the KVStore
Reviewers: teon.banek, mferencevic, ipaljak

Reviewed By: ipaljak

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1331
2018-04-28 13:19:09 +02:00
Marko Budiselic
c76170a9db Clean utils folder (namespaces, function names)
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1359
2018-04-22 09:44:32 +02:00
Dominik Gleich
87dbe26038 Check if connection alive & fix pure virtual bug
Reviewers: mferencevic, msantl, florijan

Reviewed By: msantl

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1353
2018-04-12 10:17:00 +02:00
Marko Budiselic
20d667f8bf Clean utils folder
Summary: The goal is to standardize utils folder.

Reviewers: teon.banek, mferencevic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1354
2018-04-11 16:19:46 +02:00
Marin Tomic
5f53a7a759 Add tuple serialization
Reviewers: mferencevic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1337
2018-04-05 10:58:59 +02:00
Matej Ferencevic
485e1988c3 Split signals utils into cpp and hpp
Reviewers: buda

Reviewed By: buda

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1335
2018-04-03 11:17:11 +02:00
Matej Ferencevic
f8a4fae080 Add ignore signal handler and cleanup
Reviewers: teon.banek, buda

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1333
2018-03-30 12:52:12 +02:00
florijan
a88c598822 Use wait-in-destruct future everywhere
Summary:
Before we used `utils::Future` only where it's created by our `ThreadPool`.
I suggest in this diff that we use it everywhere, it's a bit more defensive and
should not have any downsides.

Reviewers: msantl, teon.banek

Reviewed By: msantl

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1316
2018-03-26 14:15:11 +02:00
florijan
c826fa6640 Fix recovery bug (transaction ID bumping)
Summary:
When performing recovery, ensure that the transaction ID in engine is
bumped to one after the max tx id seen in recovery.

Reviewers: dgleich

Reviewed By: dgleich

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1312
2018-03-23 10:09:04 +01:00
Matija Santl
4e29b7031a Add a class that logs stacktrace on destruction
Summary:
Added a class that is supposed to be used as a base class on classes
where we want to see the stacktrace of destructor call.

Example of the output is P7 where classes `GraphDb` and `Client` extend
`LogDestructor` base.

Reviewers: florijan, teon.banek

Reviewed By: florijan

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1281
2018-03-13 10:10:52 +01:00
florijan
42ca81eb01 Use custom future that waits on destruct
Reviewers: teon.banek, dgleich

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1286
2018-03-09 10:16:17 +01:00
Marin Tomic
d673d692cb Add error message to AvailableMem
Summary:
test:

```
#include <iostream>
#include "utils/sysinfo/memory.hpp"

#include <sys/resource.h>

int main(void) {
  rlimit lim;
  lim.rlim_cur = 0;
  lim.rlim_max = 0;
  setrlimit(RLIMIT_NOFILE, &lim);
  std::cout << utils::AvailableMem();
  return 0;
}
```

Prints out:
```
E0303 15:08:53.314087 17511] Failed to read amount of available memory from /proc/meminfo
```

Reviewers: mferencevic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1269
2018-03-05 10:18:16 +01:00
florijan
bb62f463f8 Refactor distributed transactional cache GC
Summary:
Release of per-transaction data in distributed Memgraph refactored. The
master node no longer releases each time a transaction is done, thus
offloading some work from the engine.

Reviewers: dgleich

Reviewed By: dgleich

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1235
2018-02-27 10:47:58 +01:00
Matej Ferencevic
d99724647a Add thread names
Summary:
To see the thread names in htop press <F2> to enter setup and under
'Display options' choose 'Show custom thread names'.

Reviewers: buda, teon.banek, florijan

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1234
2018-02-23 16:04:49 +01:00
Teon Banek
452ce6a30c Use std::async for fetching remote edges in Expand
Summary:
This may improve the query execution workload, because the Expand will
yield local results while it waits for remote ones. Note that we rely on
the fact that walking the graph produces results without any predetermined
order. Therefore, we can yield paths as we see fit. Enforcing the order
is done through OrderBy operator, and this change shouldn't affect that.

Reviewers: florijan, msantl, buda

Reviewed By: florijan

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1215
2018-02-22 17:11:53 +01:00
Marin Tomic
5ff1ca4a5d Add client side RPC stats
Summary: ^^

Reviewers: mferencevic, buda

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1224
2018-02-22 12:34:48 +01:00
Marko Budiselic
e2f5bcf96d Stats from card fraud benchmark
Reviewers: mtomic

Reviewed By: mtomic

Subscribers: mferencevic, pullbot

Differential Revision: https://phabricator.memgraph.io/D1177
2018-02-07 19:57:25 +01:00
Marin Tomic
dca1e9eebc Add initial version of statsd
Reviewers: mferencevic, teon.banek, buda, mculinovic

Reviewed By: mferencevic

Subscribers: teon.banek, pullbot

Differential Revision: https://phabricator.memgraph.io/D1152
2018-02-02 17:02:37 +01:00
florijan
e5035cf477 Support graph elements in remote pull rpc
Reviewers: teon.banek, dgleich, msantl, buda

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1157
2018-02-01 10:53:41 +01:00
Teon Banek
dbc9c995c9 Plan distributed execution of basic read operators
Summary:
Remove AdvanceCommand operator declaration.
Add query/plan/distributed source files.
Add hacked cloning of LogicalOperator via serialization.
Add virtual Default methods to CompositeVisitor.

Use BOOST_CLASS_EXPORT_KEY in ast.hpp and operator.hpp.

This is needed in a single binary to correctly serialize polymorphic
classes. The previous implementation worked because the memgraph_lib was
linked with test binaries, but nobody was actually serializing things
inside the single memgraph binary itself.

Print PullRemote symbols in tests/manual/query_planner

Add names to implicitly created aggregation symbols

Reviewers: florijan, msantl

Reviewed By: florijan

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1137
2018-01-25 14:20:51 +01:00
Matej Ferencevic
fc20ddcd25 RPC refactor
Summary:
Start removal of old logic
Remove more obsolete classes
Move Message class to RPC
Remove client logic from system
Remove messaging namespace
Move protocol from messaging to rpc
Move System from messaging to rpc
Remove unnecessary namespace
Remove System from RPC Client
Split Client and Server into separate files
Start implementing new client logic
First semi-working state
Changed network protocol layout
Rewrite client
Fix client receive bug
Cleanup code of debug lines
Migrate to accessors
Migrate back to binary boost archives
Remove debug logging from server
Disable timeout test
Reduce message_id from uint64_t to uint32_t
Add multiple workers to server
Fix compiler warnings
Apply clang-format

Reviewers: teon.banek, florijan, dgleich, buda, mtomic

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1129
2018-01-24 15:27:40 +01:00
florijan
e1e4a70714 Implement graph element rpc
Summary:
- End to end distributed GraphDb testing
- Refactors as necessary
- Basic RemoteCache for storing remote data
- RemoteDataRpc

As we are on a tight schedule, please let's focus on the essentials:
functionality and proper testing.

Reviewers: dgleich, teon.banek, buda

Reviewed By: dgleich

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1121
2018-01-22 14:20:41 +01:00
Dominik Gleich
07d262cd1e Add virtual destructors
Summary:
Virtual destructors were missing in classes/structs which can
be inherited.
A missing virtual destructor gives undefined behaviour when
deleting derived class using base type.

Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1117
2018-01-19 10:40:09 +01:00
florijan
813d37e939 Migrate db::types to storage::
Reviewers: teon.banek, dgleich

Reviewed By: teon.banek, dgleich

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1110
2018-01-17 10:35:12 +01:00
Teon Banek
98cbd2b500 Cleanup utils::File API
Summary:
Close the file descriptor in File destructor. This will prevent
accidental crashes during unexpected destructor calls. For example, if
an exception is thrown before the file is closed. File now takes
ownership of the descriptor. These changes now honor RAII idiom, which
should handle most of the peculiarities of C++.

Use optional value for TryOpenFile function, instead of returning a File
without a descriptor. It makes the failure state more semantically clear
to the API user.

Merge utils/filesystem with utils/file

The files aren't that big, and the naming is a bit confusing because
functions aren't really grouped for file and filesystem distinction.

Reviewers: mferencevic, mtomic

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1111
2018-01-16 15:38:12 +01:00
Marin Tomic
9e42ebbb67 Implement simple log file storage for raft
Summary:
Added wrappers for some Unix system calls in utils/filesystem.hpp and implemented
a simple log storage interface for Raft. It is not very efficient, we will need
something more sophisticated later, but this is good enough for testing.

Reviewers: mferencevic, mislav.bradac, buda, mculinovic

Reviewed By: mferencevic

Subscribers: teon.banek, dgleich, pullbot

Differential Revision: https://phabricator.memgraph.io/D1091
2018-01-15 18:07:45 +01:00
Dominik Gleich
5418dfb19e Rename NetworkEndpoint
Summary:
Rename redunant port str

Add endpoint << operator

Migrate everything to endpoint

Reviewers: mferencevic, florijan

Reviewed By: mferencevic

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1100
2018-01-15 15:47:37 +01:00
florijan
6fc6a27288 Refactor GraphDb
Summary:
GraphDb is refactored to become an API exposing different parts
necessary for the database to function. These different parts can have
different implementations in SingleNode or distributed Master/Server
GraphDb implementations.

Interally GraphDb is implemented using two class heirarchies. One
contains all the members and correct wiring for each situation. The
other takes care of initialization and shutdown. This architecture is
practical because it can guarantee that the initialization of the
object structure is complete, before initializing state.

Reviewers: buda, mislav.bradac, dgleich, teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1093
2018-01-12 16:47:24 +01:00
florijan
3cf81380b8 Implement vertex/edge serialization
Summary:
Serialization of vertices and edges for distributed. Based on Boost
serialization. Threrefore moved TypedValue serialization from AST to
utils.

Reviewers: buda, dgleich, teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1088
2018-01-10 13:32:18 +01:00
Mislav Bradac
d3623585e7 Migrate cereal to boost_serialization
Reviewers: teon.banek

Reviewed By: teon.banek

Subscribers: pullbot

Differential Revision: https://phabricator.memgraph.io/D1077
2017-12-27 13:44:46 +01:00
Marin Tomic
6861a580c7 Add #pragma once to cereal_optional.hpp
Reviewers: mferencevic

Reviewed By: mferencevic

Differential Revision: https://phabricator.memgraph.io/D1080
2017-12-21 16:50:13 +01:00